PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04499A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 387aa    MW: 39487.1 Da    PI: 5.3871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04499AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35.1e-12205250555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Oropetium_20150105_04499A 205 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 250
                                99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.17E-13198254No hitNo description
SuperFamilySSF474594.19E-17198260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16202259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9205250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MQPSGREMQG GGGGQDDFFN QMLSALPTAW SELGSGKSPW DLPAAGVSED PAFDESALLA  60
SRLRHHQIGG GGDKPVMLHL SDLHGLAGDE DGGNAGFLPL PLFTDRTREH MDAAAFKSPN  120
AAGGDEALYN GFGAVGMHGT GAVQTPPFGQ GGPMPAQSFG GDVPSGGGTA LAGAPAAGAS  180
SGGGGAAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD  240
EIIDYVKFLQ LQVKVLSMSR LGGASAVTPL VANMSSEGNG NSNGSENGCS SLRLTEQQVA  300
KLMEEDMGSA MQYLQGKGLC LMPISLASAI SSATSSSLLS RPSIPPMGGA GGPLHDGSSP  360
TSPRLVNGAC GDDSQTIKDA GASDKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742258e-69AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.11e-171uncharacterized protein LOC100284814
SwissprotQ9ZUG92e-75BH066_ARATH; Transcription factor bHLH66
TrEMBLB6TXR41e-171B6TXR4_MAIZE; BHLH transcription factor
STRINGSb04g035890.11e-152(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-42LJRHL1-like 1